Zoological Research (动物学研究) 2009/30:1 PP.17-23
Partial sequences of the mitochondrial DNA cytochrome c oxidase subunit I gene (COI) of seven Tegillarca granosa populations, which were collected from China's coastal areas, were amplified by polymerase chain reaction (PCR). The length of COI gene of 38 Tegillarca granosa individuals from seven populations was all 660bp. One hundred and three variable sites were detected in the nucleotide sequences of 660 bp, and 17 different haplotypes were identified. The result showed that the seven populations could be divided into two groups based on the the genetic distance and phylogenetic analysis of their COI gene sequences. The two groups were classified as Group in the Northern Fujian (including Fujian) and Group in the Southern Fujian. Group in the Northern Fujian was composed of five populations and the genetic distance was 0.0016. Group in the Southern Fujian was composed of two populations and the genetic distance was 0.0006. However, the genetic distance between the two groups was significantly high (0.1529), which suggested significant genetic differentiation between the two groups. It suggested that Group in the North of Fujian (including Fujian) and Group in the South of Fujian should be the same species, but they were different subspecies.
Chen LM, Kong XY, Yu ZN, Yu SS, Xu H. 2005. Sequence comparison and phylogenetic analysis of mtDNA 16S rRNA and COI gene fragments in three species of razor shell [J]. Marine Sciences, 29(8): 27-32. [陈丽梅, 孔晓瑜, 喻子牛, 于珊珊, 徐 晖. 2005. 3种蛏类线粒体16S rRNA和COI 基因片段的序列比较及其系统学初步研究. 海洋科学, 29(8): 27-32.]
Cho ES, Jung CG, Sohn SG, Kim CW, Han SJ. 2007. Population genetic structure of the ark shell Scapharca broughtonii Schrenck from Korea, China, and Russia based on COI gene sequences [J]. Marine Biotechnology, 9(2): 203-216.
Donald KM, Kennedy M, Spencer HG. 2005. The phylogeny and taxonomy of austral monodontine topshells (Mollusca: Gastropoda: Trochidae), inferred from DNA sequences [J]. Mol Phylogenet Evol, 37: 474-483.
Folmer O, Black M, Hoeh W, Lutz R, Vrijenhoek R. 1994. DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates [J]. Mol MarBiol Biotechnol, 3: 294-299.
Hafner MS, Sudman PD, Villablance FX, Spradling TA, Demastes JW, Nadler SA. 1994. Disparate rates of molecular evolution in cospeciating hosts and parasites [J]. Science, 365: 1087-1090.
Harrison JS. 2004. Evolution, biogeography, and the utility of mitochondrial 16s and COI genes in phylogenetic analysis of the crab genus Austinixa (Decapoda: Pinnotheridae) [J]. Mol Phylogenet Evol, 30: 743-754.
Kong XY, Jiang YY, Xiang JH, Yu ZN, LiuYJ. 2001a. Sequencing and potential uses of mitochondrial 16S rRNA and COI gene fragment in blood clam Scapharca broughtonii [J]. Marine Science, 25(12): 46-48 [孔晓瑜, 姜艳艳, 相建海, 喻子牛, 刘亚军. 2001a. 魁蚶线粒体16S rRNA和COI基因片段序列测定及其应用前景. 海洋科学, 25(12): 46-48.]
Kong XY, Yu ZN, Liu YJ, Gao TX, Wu YF. 2001b. Comparative study of mitochondrial COl gene fragment between Chinese mitten crab (Eriocheir sinensis) and Japanese mitten crab (Eriocheir japonica) [J]. Journal of ocean university of Qingdao, 31(6): 861-866. [孔晓瑜, 喻子午, 刘亚军, 高天翔, 武云飞. 2001b. 中华绒螯蟹与日本绒螯蟹线粒体COI基因片段的序列比较研究. 青岛海洋大学学报, 31(6): 861-866.]
Kumar S, Tamura K, Nei M. 2004. MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment [J]. Briefings in Bioinformatics, 5: 150-163.
Li CH, Li TW, Song LS, Su XR. 2003. RAPD analysis on intra-species differentiation of Tegillarca granosa populations to the south and north of Fujian Province [J]. Zool Res, 24(5): 362-366. [李成华, 李太武, 宋林生, 苏秀榕. 2003. 福建南北泥蚶种内分化的RAPD分析. 动物学研究, 24(5): 362-366.]
Li TW, Li CH, Song LS, Su XR. 2003. RAPD variation within and among five populations of Tegillarca granosa [J]. Biodiversity Science, 11(2): 118-124. [李太武, 李成华, 宋林生, 苏秀榕. 2003. 5个泥蚶群体遗传多样性的RAPD分析. 生物多样性, 11(2):118-124.]
Lǚ ZM, Li TW, Su XR. 2005. Study on genetic diversity of Tegillarca granosa [J]. High Technology Letters, l5(l2): 104-110 . [吕振明,李太武, 苏秀榕. 2005. 泥蚶遗传多样性的研究. 高技术通讯, l5(l2): 104-110.]
Medina M, Walsh PJ. 2000. Molecular systematics of the order Anaspidea based on mitochondrial DNA sequence (12S, 16S, and COI) [J]. Mol Phylogenet Evol, 15(1): 41-58.
Miya M, Takeshima H, Endo H, Ishiguro NB, Inoue JG, Mukai T, Satoh TP, Yamaguchi M, Kawaguchi A, Mabuchi K, Shirai SM, Nishida M. 2003. Major patterns of higher teleostean phylogenies: A new perspective based on 100 complete mitochondrial DNA sequences [J]. Mol Phylogenet Evol, 26: 121-138.
Rozas J, Sánchez-DelBarrio JC, Messeguer X and Rozas R. 2003. DnaSP, DNA polymorphism analyses by the coalescent and other methods [J]. Bioinformatics, 19: 2496-2497.
Swofford DL. 2003. PAUP：Phylogenetic anlysis using parsimony (* and other methods), Version 10 [J]. Sinauer, Sunderland, MA.
Yu ZN, Kong XY, YR, Wang RC, Liu BQ. 1997. Allozyme variation within populations of Tegillarca granosa [J]. Journal of fishery sciences of China, 4(5): 15-21. [喻子牛, 孔晓瑜, 杨 锐, 王如才, 刘必谦. 1997. 泥蚶等位基因酶遗传变异研究. 中国水产科学, 4(5): 5-21.]
Zhang YP, Lin ZH, Ying XP. 2004. Morphological variations and discriminant analysis of different geographical populations of Tegillarca granosa [J]. Journal Of Fisheries Of China, 28(3): 339-342. [张永普, 林志华, 应雪萍. 2004. 不同地理种群泥蚶的形态差异与判别分析. 水产学报, 28(3): 339-342.]
Zheng F, Lu XL, Sun HY, Zhao Q. 2006. Genetic differentiation of Sinopotamon yangtsekiense based on Mitochondrial Cytochrome Oxidase Subunit I Gene [J]. Journal of Nanjing Normal University (Natural Science), 29(2): 103-105. [郑 芳, 吕秀玲, 孙红英, 赵 强. 2006. 基于线粒体COI基因序列探讨长江华溪蟹的遗传分化. 南京师大学报(自然科学版), 29(2): 103-105.]